NMR Ensemble

1A84

NMR SOLUTION STRUCTURE OF A DNA DODECAMER DUPLEX CONTAINING A CIS-DIAMMINEPLATINUM(II) D(GPG) INTRASTRAND CROSS-LINK, THE MAJOR ADDUCT OF THE ANTICANCER DRUG CISPLATIN, 1 STRUCTURE

Structural Biology Knowledgebase: 1A84 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1
  • Conformers Submitted: 1
  • Selection Criteria: Least Restraint Violation

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1A84

Classification: DNA

Total Structure Weight: 7626.91

Macromolecule Entities
Molecule Chains Length Organism Details
DNA D(CCTCTG*G*TCTCC) A 12 synthetic CISPLATIN INTRASTRAND CROSS-LINKED DNA
DNA D(GGAGACCAGAGG) B 12 synthetic CISPLATIN INTRASTRAND CROSS-LINKED DNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CPT
Query on CPT

A Cisplatin
diammine(dichloro)platinum (Synonym)
Cl2 H6 N2 Pt
LXZZYRPGZAFOLE-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1
  • Conformers Submitted: 1
  • Selection Criteria: LEAST RESTRAINT VIOLATION

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-04-02
  • Released Date: 1998-11-25
  • Deposition author(s): Gelasco, A., Lippard, S.J.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4