REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
DOI:10.2210/pdb1a6y/pdb   NDB ID: PD0008
1A6Y
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 34445.65
    Molecule: DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3')
    Polymer: 1 Type: dna Length: 20
    Chains: C
    Molecule: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3')
    Polymer: 2 Type: dna Length: 20
    Chains: D
    Molecule: ORPHAN NUCLEAR RECEPTOR NR1D1
    Polymer: 3 Type: protein Length: 94
    Chains: A, B
    Fragment: DNA BINDING DOMAIN CONSISTS OF RESIDUES A 101 TO A 164, B 101 TO B 164
    Mutation: H116L
    Organism: Homo sapiens
    Gene Names: Gene View for NR1D1 EAR1 HREV THRAL
    UniProtKB: Protein Feature View | Search PDB | P20393  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5IU
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    5IU C9 H12 I N2 O8 P DU dnaLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0008
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Zhao, Q.,  Khorasanizadeh, S.,  Rastinejad, F.

    Deposition:   1998-03-04
    Release:   1998-10-21
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.192 (work)
    R-Free: 0.288
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 38.67 α = 75.16 
    b = 45.69 β = 80.64 
    c = 47.95 γ = 85.58