1A6Y

REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX

Structural Biology Knowledgebase: 1A6Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1A6Y

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 34445.65


Macromolecule Entities
Molecule Chains Length Organism Details
ORPHAN NUCLEAR RECEPTOR NR1D1 A, B 94 Homo sapiens Fragment: DNA BINDING DOMAIN CONSISTS OF RESIDUES A 101 TO A 164, B 101 TO B 164
Gene Name(s): NR1D1 Gene View EAR1 HREV THRAL
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3') C 20 synthetic
DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3') D 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5IU
Query on 5IU
C DNA LINKING C9 H12 I N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.192
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 38.67 α = 75.16
b = 45.69 β = 80.64
c = 47.95 γ = 85.58

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-03-04
  • Released Date: 1998-10-21
  • Deposition author(s): Zhao, Q., Khorasanizadeh, S., Rastinejad, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4