1A34

SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX

Structural Biology Knowledgebase: 1A34 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.179

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1A34

Classification: Virus / RNA [ VIPERdb ]

Total Structure Weight: 363272.72


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (SATELLITE TOBACCO MOSAIC VIRUS) A 159 Tobacco necrosis satellite virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') B 10 synthetic
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') C 10 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
U
Query on U

B URIDINE-5'-MONOPHOSPHATE
C9 H13 N2 O9 P
DJJCXFVJDGTHFX-XVFCMESISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.179
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 174.27 α = 90.00
b = 191.77 β = 90.00
c = 202.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-01-28
  • Released Date: 1998-04-29
  • Deposition author(s): Larson, S.B., Day, J., Greenwood, A.J., McPherson, A.

Revision History

  • 2012-07-25
    Type: Other | Details: Changed Z value
  • 2012-07-25
    Type: Source and taxonomy | Details: Corrected source organism name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4