182D

DNA-NOGALAMYCIN INTERACTIONS: THE CRYSTAL STRUCTURE OF D(TGATCA) COMPLEXED WITH NOGALAMYCIN

Structural Biology Knowledgebase: 182D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 182D

Classification: DNA

Total Structure Weight: 5192.11

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*AP*TP*CP*A)-3') A, B 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NGM
Query on NGM

A, B NOGALAMYCIN
C39 H49 N O16
KGTDRFCXGRULNK-JYOBTZKQSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.195
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.20 α = 90.00
b = 37.20 β = 90.00
c = 70.10 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1994-07-28
  • Released Date: 1994-11-30
  • Deposition author(s): Smith, C.K., Davies, G.J., Dodson, E.J., Moore, M.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4