165D

THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE

Structural Biology Knowledgebase: 165D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Observed: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 165D

Classification: DNA-RNA HYBRID

Total Structure Weight: 6595.59

Macromolecule Entities
Molecule Chains Length Organism Details
DNA/RNA (5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)-D(*(BRU))-3') A, B 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RHD
Query on RHD

A, B RHODIUM HEXAMINE ION
H18 N6 Rh
JGYYKTIOJIEIKU-QTRIFGRDAZ
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
BRU
Query on BRU
A, B DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Observed: 0.180
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 53.80 α = 90.00
b = 19.40 β = 109.90
c = 50.14 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1994-03-21
  • Released Date: 1994-08-31
  • Deposition author(s): Cruse, W., Saludjian, P., Biala, E., Strazewski, P., Prange, T., Kennard, O.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4