NMR Ensemble

146D

SOLUTION STRUCTURE OF THE MITHRAMYCIN DIMER-DNA COMPLEX

Structural Biology Knowledgebase: 146D SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 2
  • Conformers Submitted: 2
  • Selection Criteria: All Calculated Structures Submitted

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 146D

Classification: DNA

Total Structure Weight: 5857.17

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*CP*GP*CP*GP*A)-3') A, B 6 synthetic

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CRH
Query on CRH

A, B 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2- OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE
C21 H24 O7
XBKVKSRQTHGEJA-FAGSEQTRSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MDA
Query on MDA

A, B 2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE
C7 H14 O4
YQLFLCVNXSPEKQ-GBNDHIKLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DDA
Query on DDA

A, B 2,6-DIDEOXY-BETA-D-GLUCOSE
2,6-DIDEOXY-BETA-D-MANNOSE (Synonym)
C6 H12 O4
FDWRIIDFYSUTDP-KVTDHHQDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DDL
Query on DDL

A, B 2,6-DIDEOXY-BETA-D-GALACTOSE
2,6-DIDEOXY-BETA-D-TALOSE (Synonym)
C6 H12 O4
FDWRIIDFYSUTDP-KAZBKCHUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 2
  • Conformers Submitted: 2
  • Selection Criteria: all calculated structures submitted

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1993-11-09
  • Released Date: 1995-03-31
  • Deposition author(s): Sastry, M., Patel, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4