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MINOR GROOVE BINDING OF SN6999 TO AN ALKYLATED DNA: MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-SN6999 COMPLEX
 
 
DOI:10.2210/pdb144d/pdb   NDB ID: GDLB24
144D
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 7844.52
     
    Molecule:DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:12
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    SN6     1-METHYL-4-[4-[4-(4-(1-METHYLQUINOLINIUM)AMINO)BENZAMIDO]ANILINO]PYRIDINIUM C29 H27 N5 O 3DLigand Explorer Link out to Ligand Expos:SN6 Link out to SuperLigands:SN6 Link out to SuperHapten:SN6
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    G36 O6-ETHYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE (parent: DG)(type: dnaLinking) C12 H18 N5 O7 P Link out to Ligand Expos:G36 Link out to SuperLigands:G36 Link out to SuperHapten:G36 2D
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Gao, Y.-G.,   Sriram, M.,   Denny, W.A.,   Wang, A.H.-J.

    Deposition:   1993-10-26
    Release:   1995-05-30
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 2.25
    R-Value: 0.170 (obs.)
    R-Free: n/a
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 28.48 α = 90.00 
    b = 36.11 β = 90.00 
    c = 69.60 γ = 90.00