6S3Q

Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with TFB-TBOA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of human excitatory amino acid transporter 3 (EAAT3)

Baronina, A.Pike, A.C.W.Han, S.Carpenter, E.P.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Excitatory amino acid transporter 3
A, B, C
487Homo sapiensMutation(s): 2 
Gene Names: SLC1A1EAAC1EAAT3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P43005 (Homo sapiens)
Explore P43005 
Go to UniProtKB:  P43005
PHAROS:  P43005
GTEx:  ENSG00000106688 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP43005
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PC1
Query on PC1

Download Ideal Coordinates CCD File 
F [auth A]
G [auth A]
H [auth A]
I [auth A]
J [auth A]
F [auth A],
G [auth A],
H [auth A],
I [auth A],
J [auth A],
K [auth B],
N [auth B],
O [auth B],
P [auth B],
Q [auth B],
R [auth C],
U [auth C],
V [auth C],
W [auth C],
X [auth C]
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
Y01
Query on Y01

Download Ideal Coordinates CCD File 
E [auth A],
M [auth B],
T [auth C]
CHOLESTEROL HEMISUCCINATE
C31 H50 O4
WLNARFZDISHUGS-MIXBDBMTSA-N
7O9 (Subject of Investigation/LOI)
Query on 7O9

Download Ideal Coordinates CCD File 
D [auth A],
L [auth B],
S [auth C]
(2~{S},3~{S})-2-azanyl-3-[[3-[[4-(trifluoromethyl)phenyl]carbonylamino]phenyl]methoxy]butanedioic acid
C19 H17 F3 N2 O6
LPWONNPEPDHEAI-GJZGRUSLSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
7O9 BindingDB:  6S3Q IC50: min: 117, max: 300 (nM) from 3 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
MODEL REFINEMENTPHENIX1.14

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom106169/Z/14/Z
Biotechnology and Biological Sciences Research CouncilUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-08
    Type: Initial release
  • Version 1.1: 2024-05-22
    Changes: Data collection, Database references, Refinement description