6DAY

Xanthomonas albilineans Dihydropteroate synthase with 4-aminobenzoic acid at 1.65 A

• PDB DOI: https://doi.org/10.2210/pdb6DAY/pdb
• Entry: 6DAY supersedes: 5UUR

• Classification: TRANSFERASE
• Organism(s): Xanthomonas albilineans GPE PC73
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-05-02 Released: 2018-06-06 
• Deposition Author(s): Oliveira, A.A., Guido, R.V.C., Lima, G.M.A., Bueno, R.V., Maluf, F.V.
• Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.216 
• R-Value Work: 0.177 
• R-Value Observed: 0.179 

Literature

Xanthomonas albilineans Dihydropteroate synthase with 4-aminobenzoic acid

Oliveira, A.A., Guido, R.V.C., Lima, G.M.A., Maluf, F.V., Bueno, R.V.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 129.48 kDa 
• Atom Count: 8,469 
• Modelled Residue Count: 1,065 
• Deposited Residue Count: 1,200 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dihydropteroate synthase	A, B, C, D	300	Xanthomonas albilineans GPE PC73	Mutation(s): 0  Gene Names: folP, XALc_1165 EC: 2.5.1.15
UniProt
Find proteins for D2UDM3 (Xanthomonas albilineans (strain GPE PC73 / CFBP 7063)) Explore D2UDM3  Go to UniProtKB:  D2UDM3

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PAB	E [auth A], F [auth A], I [auth B], J [auth B], K [auth B], N [auth C], R [auth D], T [auth D]	4-AMINOBENZOIC ACID C7 H7 N O2 ALYNCZNDIQEVRV-UHFFFAOYSA-N
SO4	G [auth A], H [auth A], L [auth B], M [auth B], Q [auth C], U [auth D]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	O [auth C], P [auth C], S [auth D]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.216 
• R-Value Work: 0.177 
• R-Value Observed: 0.179 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.589	α = 90
b = 75.387	β = 101.102
c = 89.106	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-06-06 
Deposition Author(s): Oliveira, A.A., Guido, R.V.C., Lima, G.M.A., Bueno, R.V., Maluf, F.V.
• This entry supersedes: 5UUR

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Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2015/07005-3

Revision History  

• Version 1.0: 2018-06-06
  Type: Initial release
  
• Version 1.1: 2020-01-01
  Changes: Author supporting evidence
• Version 1.2: 2023-10-04
  Changes: Data collection, Database references, Refinement description