5ITT

Crystal Structure of Human NEIL1 bound to duplex DNA containing THF


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.53 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 5ITT

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 158775.66


Macromolecule Entities
Molecule Chains Length Organism Details
Endonuclease 8-like 1 A, B, C 400 Homo sapiens EC#: 3.2.2 IUBMB 4.2.99.18 IUBMB
Mutation: K242R
Gene Name(s): NEIL1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (26-MER) D, F 26 Unidentified
DNA (26-MER) E 26 Unidentified

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.53 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.210
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 73.86 α = 90.00
b = 108.75 β = 90.00
c = 171.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-17
  • Released Date: 2016-07-06
  • Deposition author(s): Zhu, C., Lu, L., Zhang, J., Yue, Z., Song, J., Zong, S., Liu, M., Stovicek, O., Gao, Y., Yi, C.

Revision History

  • 2016-08-03
    Type: Database references