5D7A

Crystal structure of the kinase domain of TRAF2 and NCK-interacting protein kinase with NCB-0846


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 5D7A

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 106643.45

Macromolecule Entities
Molecule Chains Length Organism Details
TRAF2 and NCK-interacting protein kinase A, B, C 308 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): TNIK Gene View KIAA0551
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
58C
Query on 58C

A, B, C cis-4-{[2-(1H-benzimidazol-5-ylamino)quinazolin- 8-yl]oxy}cyclohexanol
C21 H21 N5 O2
FYWRWBSYRGSWIQ-IYBDPMFKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.184
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 212.62 α = 90.00
b = 124.97 β = 96.32
c = 49.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-13
  • Released Date: 2016-08-17
  • Deposition author(s): Ohbayashi, N., Kukimoto-Niino, M., Yamada, T., Shirouzu, M.

Revision History

  • 2016-09-07
    Type: Database references, Structure summary
  • 2016-09-28
    Type: Structure summary