5Y79

Crystal structure of the triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 5Y79

Classification: TRANSPORT PROTEIN

Total Structure Weight: 85120.88

Macromolecule Entities
Molecule Chains Length Organism Details
Putative hexose phosphate translocator A, B 329 Galdieria sulphuraria Fragment: UNP residues 91-410
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OLC
Query on OLC

A, B (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FLC
Query on FLC

A CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3PG
Query on 3PG

A, B 3-PHOSPHOGLYCERIC ACID
C3 H7 O7 P
OSJPPGNTCRNQQC-UWTATZPHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 107.05 α = 90.00
b = 165.33 β = 90.00
c = 41.14 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-08-16
  • Released Date: 2017-10-04
  • Deposition author(s): Lee, Y., Nishizawa, T., Takemoto, M., Kumazaki, K., Yamashita, K., Hirata, K., Minoda, A., Nagatoishi, S., Tsumoto, K., Ishitani, R., Nureki, O.

Revision History

  • Version 1_0: 2017-10-04

    Type: Initial release

  • Version 1_1: 2017-10-18

    Type: Database references

  • Version 1_2: 2017-11-01

    Type: Database references