5JUY

Active human apoptosome with procaspase-9


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.1 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5JUY

Classification: APOPTOSIS

Total Structure Weight: 1127664.13

Macromolecule Entities
Molecule Chains Length Organism Details
Apoptotic protease-activating factor 1 A, B, C..., D, E, F, GA, B, C, D, E, F, G 1248 Homo sapiens Details: without N-terminal CARDs
Gene Name(s): APAF1 Gene View KIAA0413
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Cytochrome c H, I, J..., K, L, M, NH, I, J, K, L, M, N 104 Bos taurus Gene Name(s): CYCS Gene View CYC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Caspase-9 O, P, Q, R 95 Homo sapiens EC#: 3.4.22.62 IUBMB
Fragment: N-terminal caspase recognition domain
Details: N-terminal caspase recognition domain (CARD) of procaspase-9
Gene Name(s): CASP9 Gene View MCH6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEC
Query on HEC

H, I, J, K, L, M, N HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DTP
Query on DTP

A, B, C, D, E, F, G 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
C10 H16 N5 O12 P3
SUYVUBYJARFZHO-RRKCRQDMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.1 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-10
  • Released Date: 2016-10-19
  • Deposition author(s): Cheng, T.C., Hong, C., Akey, I.V., Yuan, S., Akey, C.W.

Revision History

  • 2016-10-26
    Type: Other