5I71

X-ray structure of the ts3 human serotonin transporter complexed with s-citalopram at the central site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.240

Literature

Macromolecules
Sequence Display for 5I71

Classification: MEMBRANE PROTEIN

Total Structure Weight: 110552.30

Macromolecule Entities
Molecule Chains Length Organism Details
Sodium-dependent serotonin transporter A 549 Homo sapiens Gene Name(s): SLC6A4 Gene View HTT Gene View SERT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
8B6 antibody, heavy chain B 221 Mus musculus
8B6 antibody, light chain C 214 Mus musculus

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Solute Carrier (SLC) Transporter Superfamily

Protein Name: Serotonin transporter (SERT) ts3 construct with bound paroxetine at central site


Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CLR
Query on CLR

A CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
68P
Query on 68P

A (1S)-1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)- 1,3-dihydro-2-benzofuran-5-carbonitrile
C20 H21 F N2 O
WSEQXVZVJXJVFP-FQEVSTJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D12
Query on D12

A DODECANE
C12 H26
SNRUBQQJIBEYMU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEX
Query on HEX

A HEXANE
C6 H14
VLKZOEOYAKHREP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.240
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 129.72 α = 90.00
b = 163.74 β = 90.00
c = 140.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-16
  • Released Date: 2016-04-13
  • Deposition author(s): Coleman, J.A., Green, E.M., Gouaux, E.

Revision History

  • 2016-05-04
    Type: Citation | Details: Citation
  • 2016-04-20
    Type: Citation | Details: Citation