Macromolecules
Sequence Display for 5I20

Classification: MEMBRANE PROTEIN

Total Structure Weight: 192731.41

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A, B, C..., D, E, FA, B, C, D, E, F 298 Starkeya novella Gene Name(s): Snov_2734
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Drug/Metabolite Transporter (DMT) Superfamily

Protein Name: YddG aromatic amino acid exporter


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OLC
Query on OLC

A, B, C, D, E (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.226
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 105.84 α = 90.00
b = 84.65 β = 108.46
c = 112.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-08
  • Released Date: 2016-06-01
  • Deposition author(s): Ishitani, R., Nureki, O.

Revision History

  • 2016-06-22
    Type: Database references