Structure of wild-type human MBD4 bound to a G:T mismatch
Ouzon-Shubeita, H., Lin, Y.-L., Lee, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Methyl-CpG-binding domain protein 4 | 192 | Homo sapiens | Mutation(s): 0  Gene Names: MBD4, MED1 EC: 3.2.2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O95243 (Homo sapiens) Explore O95243  Go to UniProtKB:  O95243 | |||||
PHAROS:  O95243 GTEx:  ENSG00000129071  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O95243 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
7-mer DNA | B [auth C] | 7 | synthetic construct | ||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
12-mer DNA(G) | C [auth D] | 12 | synthetic construct | ||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
5-mer DNA | D [auth B] | 5 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 41.886 | α = 90 |
b = 54.875 | β = 90 |
c = 104.522 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
MOLREP | phasing |
HKL-2000 | data scaling |
HKL-2000 | data reduction |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS) | United States | R21ES023101 |
Welch Foundation | United States | F-1741 |