5CEV

ARGINASE FROM BACILLUS CALDEVELOX, L-LYSINE COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 5CEV

Classification: HYDROLASE

Total Structure Weight: 196754.33

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (ARGINASE) A, B, C..., D, E, FA, B, C, D, E, F 299 [bacillus] caldovelox EC#: 3.5.3.1 IUBMB
Details: EACH MOLECULE HAS AN L-LYSINE MOLECULE BOUND IN ITS ACTIVE SITE (THESE ARE LABELLED R 401 - R 406) AND A GUANIDINE ION AT AN EXTERNAL, INTER-SUBUNIT SITE (LABELLED R 407 - R 412).
Gene Name(s): rocF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LYS
Query on LYS

A LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAI
Query on GAI

B, C, D, E GUANIDINE
C H5 N3
ZRALSGWEFCBTJO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D, E, F MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.212
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 106.40 α = 90.00
b = 277.00 β = 90.00
c = 138.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-03-16
  • Released Date: 1999-04-16
  • Deposition author(s): Bewley, M.C., Jeffrey, P.D., Patchett, M.L., Kanyo, Z.F., Baker, E.N.

Revision History

  • 2007-10-16
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance