5B4P

Complex structure of human C5a and its binding repebody

PDB DOI: https://doi.org/10.2210/pdb5B4P/pdb

Classification: SIGNALING PROTEIN/MEMBRANE PROTEIN
Organism(s): synthetic construct, Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-04-12 Released: 2017-04-12
Deposition Author(s): Kim, H.-S., Choi, J.M., Hwang, D.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.310
R-Value Work: 0.272
R-Value Observed: 0.274

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Complex structure of human C5a and its binding repebody

Kim, H.-S., Choi, J.M., Hwang, D.E.

To be published.

Macromolecule Content

Total Structure Weight: 76.08 kDa
Atom Count: 5,157
Modelled Residue Count: 658
Deposited Residue Count: 672
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
repebody	A, C	261	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
C5a anaphylatoxin	B, D	75	Homo sapiens	Mutation(s): 0 Gene Names: C5, CPAMD4
UniProt & NIH Common Fund Data Resources
Find proteins for P01031 (Homo sapiens) Explore P01031 Go to UniProtKB: P01031
PHAROS: P01031 GTEx: ENSG00000106804
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P01031
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1PE Query on 1PE Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain I [auth B] MOL2 format, chain E [auth A] MOL2 format, chain I [auth B]	E [auth A], I [auth B]	PENTAETHYLENE GLYCOL C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain I [auth B] Interactions & Density Focus chain E [auth A] Focus chain I [auth B]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain J [auth B] SDF format, chain K [auth C] SDF format, chain L [auth C] SDF format, chain M [auth C] SDF format, chain N [auth D] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth C] MOL2 format, chain L [auth C] MOL2 format, chain M [auth C] MOL2 format, chain N [auth D]	F [auth A] G [auth A] H [auth A] J [auth B] K [auth C] F [auth A], G [auth A], H [auth A], J [auth B], K [auth C], L [auth C], M [auth C], N [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth C] Focus chain N [auth D] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth C] Focus chain N [auth D]