4GS7

Structure of the Interleukin-15 quaternary complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 4GS7

Classification: IMMUNE SYSTEM

Total Structure Weight: 71831.05

Macromolecule Entities
Molecule Chains Length Organism Details
Interleukin-15 A 116 Homo sapiens Gene Name(s): IL15 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Interleukin-2 receptor subunit beta B 217 Homo sapiens Mutation: N3Q, N17Q, N45Q
Gene Name(s): IL2RB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Cytokine receptor common subunit gamma C 203 Homo sapiens Mutation: N53Q
Gene Name(s): IL2RG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Interleukin-15 receptor subunit alpha D 69 Homo sapiens Gene Name(s): IL15RA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

C ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MLY
Query on MLY
A, B, C L-PEPTIDE LINKING C8 H18 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.182
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.95 α = 90.00
b = 74.61 β = 90.00
c = 129.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-27
  • Released Date: 2012-11-07
  • Deposition author(s): Ring, A.M., Ozkan, E., Feng, D., Garcia, K.C.

Revision History

  • 2012-11-14
    Type: Database references
  • 2012-12-05
    Type: Database references