4DKD

Crystal Structure of Human Interleukin-34 Bound to Human CSF-1R


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.252

Literature

Macromolecules
Sequence Display for 4DKD

Classification: CYTOKINE / TRANSFERASE

Total Structure Weight: 77042.23

Macromolecule Entities
Molecule Chains Length Organism Details
Interleukin-34 A, B 185 Homo sapiens Fragment: active core, UNP residues 21-193
Gene Name(s): IL34 Gene View C16orf77
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macrophage colony-stimulating factor 1 receptor C 292 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: D1-D3, UNP residues 20-299
Gene Name(s): CSF1R Gene View FMS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.252
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 101.36 α = 90.00
b = 101.36 β = 90.00
c = 175.25 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-03
  • Released Date: 2012-04-11
  • Deposition author(s): Ma, X., Bazan, J.F., Starovasnik, M.A.

Revision History

  • 2012-04-25
    Type: Database references