4NZQ

Crystal structure of Ca2+-free prothrombin deletion mutant residues 146-167


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 4NZQ

Classification: HYDROLASE

Total Structure Weight: 64221.29

Macromolecule Entities
Molecule Chains Length Organism Details
Prothrombin A 557 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CGU
Query on CGU
A L-PEPTIDE LINKING C6 H9 N O6 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.226
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 88.75 α = 90.00
b = 171.74 β = 90.00
c = 141.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-12
  • Released Date: 2014-05-21
  • Deposition author(s): Pozzi, N., Chen, Z., Shropshire, D.B., Pelc, L.A., Di Cera, E.

Revision History

  • 2014-06-25
    Type: Database references
  • 2017-08-23
    Type: Refinement description, Source and taxonomy