4KMD

Crystal structure of Sufud60-Gli1p


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 4KMD

Classification: PROTEIN BINDING / TRANSCRIPTION

Total Structure Weight: 51768.91

Macromolecule Entities
Molecule Chains Length Organism Details
Sufu A 444 Homo sapiens Fragment: UNP RESIDUES 1-285, 346-484
Gene Name(s): SUFU Gene View UNQ650/PRO1280
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Zinc finger protein GLI1 B 17 Homo sapiens Fragment: UNP RESIDUES 112-128
Gene Name(s): GLI1 Gene View GLI
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DTT
Query on DTT

A 2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL (Synonym)
C4 H10 O2 S2
VHJLVAABSRFDPM-IMJSIDKUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.195
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 70.83 α = 90.00
b = 82.12 β = 90.00
c = 149.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-08
  • Released Date: 2013-11-20
  • Deposition author(s): Zhang, Y., Qi, X., Zhang, Z., Wu, G.

Revision History

  • Version 1_0: 2013-11-20

    Type: Initial release

  • Version 1_1: 2013-11-27

    Type: Experimental preparation

  • Version 1_2: 2014-02-12

    Type: Database references

  • Version 1_3: 2017-08-23

    Type: Refinement description, Source and taxonomy

  • Version 1_4: 2017-11-15

    Type: Refinement description