4JUY

Crystal structure of the PUB domain of E3 ubiquitin ligase RNF31

• PDB DOI: https://doi.org/10.2210/pdb4JUY/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2013-03-25 Released: 2013-04-10 
• Deposition Author(s): Dong, A., Hu, J., Li, Y., Wernimont, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.258 
• R-Value Work: 0.236 
• R-Value Observed: 0.237 

Literature

Crystal structure of the PUB domain of E3 ubiquitin ligase RNF31

Hu, J., Dong, A., Li, Y., Wernimont, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D4  (Explore in 3D)
Global Stoichiometry: Homo 8-mer - A8 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 45.35 kDa 
• Atom Count: 2,955 
• Modelled Residue Count: 381 
• Deposited Residue Count: 396 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase RNF31	A, B	198	Homo sapiens	Mutation(s): 0  Gene Names: RNF31, ZIBRA
UniProt & NIH Common Fund Data Resources
Find proteins for Q96EP0 (Homo sapiens) Explore Q96EP0  Go to UniProtKB:  Q96EP0
PHAROS:  Q96EP0 GTEx:  ENSG00000092098

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UNX	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], J [auth B], K [auth B], L [auth B]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.258 
• R-Value Work: 0.236 
• R-Value Observed: 0.237 
• Space Group: F 4 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 256.488	α = 90
b = 256.488	β = 90
c = 256.488	γ = 90

Software Package:

Software Name	Purpose
SOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-04-10 
Deposition Author(s): Dong, A., Hu, J., Li, Y., Wernimont, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2013-04-10
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection, Database references