4A0K

STRUCTURE OF DDB1-DDB2-CUL4A-RBX1 BOUND TO A 12 BP ABASIC SITE CONTAINING DNA-DUPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.93 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.269

Literature

Macromolecules
Sequence Display for 4A0K

Classification: LIGASE / DNA-BINDING PROTEIN / DNA

Total Structure Weight: 280342.91


Macromolecule Entities
Molecule Chains Length Organism Details
CULLIN-4A A 742 Homo sapiens Fragment: RESIDUES 38-759
Gene Name(s): CUL4A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
E3 UBIQUITIN-PROTEIN LIGASE RBX1 B 117 Mus musculus EC#: 6.3.2 IUBMB
Fragment: RESIDUES 12-108
Gene Name(s): Rbx1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA DAMAGE-BINDING PROTEIN 1 C 1159 Homo sapiens Gene Name(s): DDB1 Gene View XAP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA DAMAGE-BINDING PROTEIN 2 D 382 Danio rerio Fragment: RESIDUES 60-423
Mutation: L180Q, W214R
Details: VARIANT WITH GLN AT POSITION 180 AND ARG AT POSITION 214 (SIMILAR TO PDB ENTRY 3EI2)
Gene Name(s): ddb2 si:dkey-45f10.3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
12 BP THF CONTAINING DNA E 12 Synthetic construct
12 BP DNA F 12 Synthetic construct

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
E DNA LINKING C5 H11 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.93 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.269
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 210.65 α = 90.00
b = 78.02 β = 108.50
c = 276.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-09
  • Released Date: 2011-12-14
  • Deposition author(s): Fischer, E.S., Scrima, A., Gut, H., Thoma, N.H.

Revision History

No revisions since initial release