Macromolecules
Sequence Display for 3SMR

Classification: TRANSCRIPTION

Total Structure Weight: 140086.39

Macromolecule Entities
Molecule Chains Length Organism Details
WD repeat-containing protein 5 A, B, C, D 312 Homo sapiens Gene Name(s): WDR5 Gene View BIG3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NP7
Query on NP7

A, B, C, D 2-chloro-N-[2-(4-methylpiperazin-1-yl)-5- nitrophenyl]benzamide
C18 H19 Cl N4 O3
WOGZFCMBPXJNFI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A, B, C, D UNKNOWN ATOM OR ION
X
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NP7 Kd: 6900 - 7000 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.177
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 204.17 α = 90.00
b = 93.47 β = 107.24
c = 64.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-28
  • Released Date: 2011-08-31
  • Deposition author(s): Dong, A., Dombrovski, L., Wasney, G.A., Tempel, W., Senisterra, G., Bolshan, Y., Smil, D., Nguyen, K.T., Hajian, T., Poda, G., Al-Awar, R., Bountra, C., Weigelt, J., Edwards, A.M., Brown, P.J., Schapira, M., Arrowsmith, C.H., Vedadi, M., Wu, H., Structural Genomics Consortium (SGC)

Revision History

No revisions since initial release