3RDH

X-ray induced covalent inhibition of 14-3-3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 3RDH

Classification: SIGNALING PROTEIN / INHIBITOR

Total Structure Weight: 114053.29

Macromolecule Entities
Molecule Chains Length Organism Details
14-3-3 protein zeta/delta A, B, C, D 248 Homo sapiens Gene Name(s): YWHAZ Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3RD
Query on 3RD

A, B, C, D 4-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin- 2-yl}diazenyl]benzoic acid
FOBISIN101 (Synonym)
C15 H14 N3 O8 P
NPBWMMRUXMTIRC-ISLYRVAYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A, B, C, D NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3RD N/A in BindingDB
N/A in BindingMoad
IC50: 9300 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.235
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 94.75 α = 90.00
b = 94.75 β = 90.00
c = 237.86 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-01
  • Released Date: 2011-09-28
  • Deposition author(s): Horton, J.R., Upadhyay, A.K., Fu, H., Cheng, X.

Revision History

  • 2011-10-12
    Type: Database references