3L88

Crystal structure of the human Adenovirus type 21 fiber knob


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 3L88

Classification: VIRAL PROTEIN

Total Structure Weight: 267317.75

Macromolecule Entities
Molecule Chains Length Organism Details
Fiber protein A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 201 Human mastadenovirus b Fragment: Ad21 fiber knob (UNP residues 123-323)
Gene Name(s): L5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

C, E, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

J CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B, F, H, I, J, K, L SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.234
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 85.00 α = 90.00
b = 63.92 β = 91.70
c = 209.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-30
  • Released Date: 2010-04-14
  • Deposition author(s): Cupelli, K., Jost, M., Persson, B.D., Stehle, T.

Revision History

  • 2011-07-13
    Type: Version format compliance