3F5V

C2 Crystal form of mite allergen DER P 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 3F5V

Classification: HYDROLASE

Total Structure Weight: 51613.47

Macromolecule Entities
Molecule Chains Length Organism Details
Der p 1 allergen A, B 222 Dermatophagoides pteronyssinus EC#: 3.4.22.65 IUBMB
Mutation: N52Q
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P6G
Query on P6G

A, B HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400 (Synonym)
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A, B L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.158
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 95.20 α = 90.00
b = 84.07 β = 123.81
c = 75.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-04
  • Released Date: 2009-02-10
  • Deposition author(s): Stura, E.A., Minor, W., Chruszcz, M., Saint Remy, J.M.

Revision History

  • 2011-07-13
    Type: Advisory, Refinement description, Version format compliance