3F3B

Structure of the phage-like element PBSX protein xkdH from Bacillus Subtilus. Northeast Structural Genomics Consortium target SR352.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 3F3B

Classification: structural genomics unknown function

Total Structure Weight: 15354.75

Macromolecule Entities
Molecule Chains Length Organism Details
Phage-like element PBSX protein xkdH A 126 Bacillus subtilis Gene Name(s): xkdH BSU12620
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.230
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 42.66 α = 90.00
b = 42.66 β = 90.00
c = 283.65 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-30
  • Released Date: 2008-11-25
  • Deposition author(s): Kuzin, A.P., Neely, H., Seetharaman, J., Clayton, G., Ho, C.K., Janjua, H., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History

  • Version 1_0: 2008-11-25

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description