3F00

Crystal Structure of Synaptotagmin I C2A domain with Cu(II)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 3F00

Classification: METAL BINDING PROTEIN

Total Structure Weight: 16273.38

Macromolecule Entities
Molecule Chains Length Organism Details
Synaptotagmin-1 A 143 Homo sapiens Fragment: UNP residues 141-266
Gene Name(s): SYT1 Gene View SVP65 SYT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MHO
Query on MHO
A L-PEPTIDE LINKING C5 H11 N O3 S MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.201
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 41.65 α = 90.00
b = 38.36 β = 98.37
c = 44.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-24
  • Released Date: 2009-09-08
  • Deposition author(s): Guo, F., Dakshinamurthy, R., Thallapuranam, S.K.K., Sakon, J.

Revision History

  • 2011-07-13
    Type: Version format compliance