3EX7

The crystal structure of EJC in its transition state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 3EX7

Classification: hydrolase / RNA binding protein / RNA

Total Structure Weight: 197205.23


Macromolecule Entities
Molecule Chains Length Organism Details
Protein mago nashi homolog A, E 146 Homo sapiens Gene Name(s): MAGOH Gene View MAGOHA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RNA-binding protein 8A B, G 126 Homo sapiens Fragment: UNP residues 51-174
Gene Name(s): RBM8A Gene View RBM8 HSPC114 MDS014
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Eukaryotic initiation factor 4A-III C, H 413 Homo sapiens EC#: 3.6.4.13 IUBMB
Gene Name(s): EIF4A3 Gene View DDX48 KIAA0111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein CASC3 D, I 146 Homo sapiens Fragment: UNP residues 138-283
Gene Name(s): CASC3 Gene View MLN51
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') F, J 6 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

C, H ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AF3
Query on AF3

C, H ALUMINUM FLUORIDE
Al F3
KLZUFWVZNOTSEM-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

C, H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.206
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 182.04 α = 90.00
b = 100.75 β = 112.08
c = 145.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-16
  • Released Date: 2008-12-09
  • Deposition author(s): Andersen, G.R., Nielsen, K.H.

Revision History

  • 2011-07-13
    Type: Version format compliance