3D9O

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 3D9O

Classification: TRANSCRIPTION

Total Structure Weight: 36390.43

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-binding protein 16 A, B 145 Homo sapiens Fragment: CTD INTERACTING DOMAIN OF SCAF8, UNP residues 1-136
Mutation: N15M, Y17M
Gene Name(s): SCAF8 Gene View CCAP7 KIAA1116 RBM16
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CTD-PEPTIDE Z 14 Homo sapiens EC#: 2.7.7.6 IUBMB
Gene Name(s): POLR2A Gene View POLR2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, Z SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NH4
Query on NH4

A, B AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.204
  • Space Group: P 43

Unit Cell:

Length (Å) Angle (°)
a = 57.44 α = 90.00
b = 57.44 β = 90.00
c = 107.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-27
  • Released Date: 2008-06-10
  • Deposition author(s): Becker, R., Loll, B., Meinhart, A.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance