2YUU

Solution structure of the first Phorbol esters/diacylglycerol binding domain of human Protein kinase C, delta


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Least Restraint Violations Target Function

Literature

Macromolecules
Sequence Display for 2YUU

Classification: TRANSFERASE

Total Structure Weight: 9092.02

Macromolecule Entities
Molecule Chains Length Organism Details
Protein kinase C delta type A 83 Homo sapiens EC#: 2.7.11.13 IUBMB
Fragment: Phorbol esters/diacylglycerol binding domain (C1 domain)
Gene Name(s): PRKCD Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: structures with the least restraint violations,target function

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-06
  • Released Date: 2008-04-08
  • Deposition author(s): Abe, H., Miyamoto, K., Tochio, N., Saito, K., Sasagawa, A., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • Version 1_0: 2008-04-08

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance