2YLO

TARGETING THE BINDING FUNCTION 3 SITE OF THE ANDROGEN RECEPTOR THROUGH IN SILICO MOLECULAR MODELING


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 2YLO

Classification: HORMONE RECEPTOR

Total Structure Weight: 30657.96

Macromolecule Entities
Molecule Chains Length Organism Details
ANDROGEN RECEPTOR A 256 Homo sapiens Fragment: LIGAND-BINDING DOMAIN, RESIDUES 664-919
Gene Name(s): AR Gene View DHTR NR3C4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YLO
Query on YLO

A 1-[2-(4-METHYLPHENOXY)ETHYL]-2-(2-PHENOXYETHYLSULFANYL)BENZIMIDAZOLE
C24 H24 N2 O2 S
PNCBJXVNIRRHJP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TES
Query on TES

A TESTOSTERONE
C19 H28 O2
MUMGGOZAMZWBJJ-DYKIIFRCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
YLO IC50: >10000 - 50000 nM (100) BindingDB

N/A in BindingMoad
IC50: 13100 nM  PDBbind
TES EC50: 2 - 3.16 nM (100) BindingDB
IC50: 2.7 - 3090.3 nM (100) BindingDB
Ki: 1.4 - 29 nM (100) BindingDB

N/A in BindingMoad


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.224
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 55.32 α = 90.00
b = 66.50 β = 90.00
c = 73.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-04
  • Released Date: 2011-07-06
  • Deposition author(s): Lack, N.A., Axerio, P., Tavassoli, P., Kuchenbecker, K., Han, F.Q., Chan, K.H., Feau, C., LeBlanc, E., Tomlinson, E., Guy, R.K., Rennie, P.S., Cherkasov, A.

Revision History

  • Version 1_0: 2011-07-06

    Type: Initial release

  • Version 1_1: 2011-12-07

    Type: Database references, Version format compliance

  • Version 1_2: 2012-01-11

    Type: Other