2WPH

factor IXa superactive triple mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.240

Literature

Macromolecules
Sequence Display for 2WPH

Classification: BLOOD CLOTTING

Total Structure Weight: 33517.20

Macromolecule Entities
Molecule Chains Length Organism Details
COAGULATION FACTOR IXA LIGHT CHAIN E 59 Homo sapiens EC#: 3.4.21.22 IUBMB
Fragment: EGF2 DOMAIN, RESIDUES 133-191
Gene Name(s): F9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
D-PHE-PRO-ARG-CHLOROMETHYL KETONE L 3 Synthetic construct
COAGULATION FACTOR IXA HEAVY CHAIN S 235 Homo sapiens EC#: 3.4.21.22 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 227-461
Mutation: Y94F, K98BT, Y177T
Gene Name(s): F9 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PE
Query on 1PE

S PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

S CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001148
Query on PRD_001148
L BIVALIRUDIN C-terminus fragment Peptide-like /
Thrombin inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.240
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 44.29 α = 90.00
b = 66.49 β = 90.00
c = 97.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-06
  • Released Date: 2009-12-22
  • Deposition author(s): Zogg, T., Brandstetter, H.

Revision History

  • 2013-10-23
    Type: Other, Structure summary, Version format compliance
  • 2016-12-21
    Type: Source and taxonomy
  • 2017-07-05
    Type: Data collection