2W2Q

PCSK9-deltaC D374H mutant bound to WT EGF-A of LDLR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 2W2Q

Classification: HYDROLASE / RECEPTOR

Total Structure Weight: 57986.50

Macromolecule Entities
Molecule Chains Length Organism Details
PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9 A 312 Homo sapiens EC#: 3.4.21 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 153-451
Mutation: D374H
Gene Name(s): PCSK9 Gene View NARC1 PSEC0052
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LOW-DENSITY LIPOPROTEIN RECEPTOR E 107 Homo sapiens Fragment: EGF-A DOMAIN, RESIDUES 314-393
Gene Name(s): LDLR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9 P 114 Homo sapiens EC#: 3.4.21 IUBMB
Fragment: PROPEPTIDE, RESIDUES 53-152
Gene Name(s): PCSK9 Gene View NARC1 PSEC0052

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, E CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.219
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 88.37 α = 90.00
b = 88.37 β = 90.00
c = 218.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-03
  • Released Date: 2008-11-18
  • Deposition author(s): Bottomley, M.J., Cirillo, A., Orsatti, L., Ruggeri, L., Fisher, T.S., Santoro, J.C., Cummings, R.T., Cubbon, R.M., Lo Surdo, P., Calzetta, A., Noto, A., Baysarowich, J., Mattu, M., Talamo, F., De Francesco, R., Sparrow, C.P., Sitlani, A., Carfi, A.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance