2PIV

Androgen receptor with small molecule


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 2PIV

Classification: HORMONE RECEPTOR

Total Structure Weight: 30314.82

Macromolecule Entities
Molecule Chains Length Organism Details
Androgen receptor A 251 Homo sapiens Fragment: Ligand-binding domain (residues 669-919)
Gene Name(s): AR Gene View DHTR NR3C4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
T3
Query on T3

A 3,5,3'TRIIODOTHYRONINE
T3; THYROID HORMONE; LIOTHYRONINE (Synonym)
C15 H12 I3 N O4
AUYYCJSJGJYCDS-LBPRGKRZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DHT
Query on DHT

A 5-ALPHA-DIHYDROTESTOSTERONE
C19 H30 O2
NVKAWKQGWWIWPM-ABEVXSGRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
T3 IC50: >50000 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind
DHT EC50: 0.05 - 20 nM (100) BindingDB
IC50: 0 nM (100) BindingDB
Ki: 0.2 - 10 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.230
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.40 α = 90.00
b = 66.02 β = 90.00
c = 72.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-13
  • Released Date: 2007-09-25
  • Deposition author(s): Estebanez-Perpina, E., Arnold, A.A., Baxter, J.D., Webb, P., Guy, R.K., Fletterick, K.R.

Revision History

  • 2011-07-13
    Type: Version format compliance