2J7P

GMPPNP-stabilized NG domain complex of the SRP GTPases Ffh and FtsY


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 2J7P

Classification: SIGNAL RECOGNITION

Total Structure Weight: 130654.84

Macromolecule Entities
Molecule Chains Length Organism Details
SIGNAL RECOGNITION PARTICLE PROTEIN A, B 294 Thermus aquaticus Fragment: NG, RESIDUES 1-293
Gene Name(s): ffh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CELL DIVISION PROTEIN FTSY D, E 283 Thermus aquaticus Fragment: NG, RESIDUES 21-303
Gene Name(s): ftsY
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

A, B, D, E PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOD
Query on IOD

A, B, D, E IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, D, E 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

D, E POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, D, E MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.184
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 51.03 α = 90.00
b = 129.56 β = 91.66
c = 88.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-14
  • Released Date: 2006-12-11
  • Deposition author(s): Freymann, D.M.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance