2IT6

Crystal Structure of DCSIGN-CRD with man2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 2IT6

Classification: IMMUNE SYSTEM

Total Structure Weight: 18227.13

Macromolecule Entities
Molecule Chains Length Organism Details
CD209 antigen A 155 Homo sapiens Gene Name(s): CD209 Gene View CLEC4L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.196
  • Space Group: P 43

Unit Cell:

Length (Å) Angle (°)
a = 55.64 α = 90.00
b = 55.64 β = 90.00
c = 53.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-19
  • Released Date: 2006-12-05
  • Deposition author(s): Weis, W.I., Feinberg, H., Castelli, R., Drickamer, K., Seeberger, P.H.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance