2GMX

Selective Aminopyridine-Based C-Jun N-terminal Kinase inhibitors with cellular activity


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.351
  • R-Value Work: 0.266

Literature

Macromolecules
Sequence Display for 2GMX

Classification: TRANSCRIPTION

Total Structure Weight: 89785.14

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 8 A, B 370 Homo sapiens EC#: 2.7.11.24 IUBMB
Mutation: T183E, Y185E
Gene Name(s): MAPK8 Gene View JNK1 PRKM8 SAPK1 SAPK1C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
C-jun-amino-terminal kinase-interacting protein 1 F, G 11 Homo sapiens Fragment: PepJIP1 peptide
Gene Name(s): MAPK8IP1 Gene View IB1 JIP1 PRKM8IP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
877
Query on 877

A, B N-(4-AMINO-5-CYANO-6-ETHOXYPYRIDIN-2-YL)- 2-(4-BROMO-2,5-DIMETHOXYPHENYL)ACETAMIDE
C18 H19 Br N4 O4
GKODDLYLEKSDJL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
877 IC50: 77 nM (99) BindingDB

N/A in BindingMoad
IC50: 77 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.351
  • R-Value Work: 0.266
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 150.79 α = 90.00
b = 150.79 β = 90.00
c = 118.66 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-07
  • Released Date: 2006-06-06
  • Deposition author(s): Abad-Zapatero, C.

Revision History

  • Version 1_0: 2006-06-06

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance