2FK0

Crystal Structure of a H5N1 influenza virus hemagglutinin.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.268

Literature

Macromolecules
Sequence Display for 2FK0

Classification: VIRAL PROTEIN

Total Structure Weight: 537081.25

Macromolecule Entities
Molecule Chains Length Organism Details
hemagglutinin A, C, E..., G, I, K, M, O, QA, C, E, G, I, K, M, O, Q 334 Influenza a virus Fragment: RECEPTOR BINDING DOMAIN, HA14
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
hemagglutinin B, D, F..., H, J, L, N, P, RB, D, F, H, J, L, N, P, R 181 Influenza a virus Fragment: MEMBRANE FUSION DOMAIN, HA2
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C, E, G, I, K, M, O N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, E, G BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.268
  • Space Group: P 3

Unit Cell:

Length (Å) Angle (°)
a = 197.94 α = 90.00
b = 197.94 β = 90.00
c = 134.69 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-03
  • Released Date: 2006-05-02
  • Deposition author(s): Stevens, J., Wilson, I.A.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Version format compliance