1ZME

CRYSTAL STRUCTURE OF PUT3/DNA COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1ZME

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 26837.79


Macromolecule Entities
Molecule Chains Length Organism Details
PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR C, D 70 Saccharomyces cerevisiae Fragment: RESIDUES 31 - 100
Gene Name(s): PUT3 YKL015W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*CP*GP*GP*GP*AP*AP*GP*CP*CP*AP*AP*CP*TP*CP*CP*G)-3') A 17 Saccharomyces cerevisiae
DNA (5'-D(*AP*CP*GP*GP*AP*GP*(5IU)P*TP*GP*GP*CP*TP*(5IU)P*CP*CP*CP*G)-3') B 17 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5IU
Query on 5IU
B DNA LINKING C9 H12 I N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.208
  • Space Group: P 6

Unit Cell:

Length (Å) Angle (°)
a = 121.65 α = 90.00
b = 121.65 β = 90.00
c = 39.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-08-06
  • Released Date: 1998-09-16
  • Deposition author(s): Swaminathan, K., Marmorstein, R.

Revision History

  • 2008-05-22
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance