1SSP

WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1SSP

Classification: HYDROLASE / DNA

Total Structure Weight: 31948.38


Macromolecule Entities
Molecule Chains Length Organism Details
URACIL-DNA GLYCOSYLASE E 223 Homo sapiens EC#: 3.2.2.27 IUBMB
Fragment: MITOCHONDRIAL
Gene Name(s): UNG Gene View DGU UNG1 UNG15
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*TP*GP*TP*(D1P)P*AP*TP*CP*TP*T)-3' A 10 synthetic
5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3' B 11 synthetic COMPLEXED WITH URACIL

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
URA
Query on URA

E URACIL
C4 H4 N2 O2
ISAKRJDGNUQOIC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ORP
Query on ORP
A SACCHARIDE C5 H11 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.198
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 121.70 α = 90.00
b = 48.50 β = 90.00
c = 65.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-04-28
  • Released Date: 1999-05-06
  • Deposition author(s): Parikh, S.S., Mol, C.D., Slupphaug, G., Bharati, S., Krokan, H.E., Tainer, J.A.

Revision History

  • 2008-04-26
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance