1QRV

CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 1QRV

Classification: GENE REGULATION / DNA

Total Structure Weight: 22854.03


Macromolecule Entities
Molecule Chains Length Organism Details
HIGH MOBILITY GROUP PROTEIN D A, B 73 Drosophila melanogaster Fragment: RESIDUES 2-74
Gene Name(s): HmgD CG17950
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') C, D 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

C SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.238
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 43.74 α = 90.00
b = 53.80 β = 90.00
c = 86.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-06-15
  • Released Date: 1999-12-18
  • Deposition author(s): Murphy IV, F.V., Sweet, R.M., Churchill, M.E.A.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance