1XD3

Crystal structure of UCHL3-UbVME complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 1XD3

Classification: HYDROLASE

Total Structure Weight: 69944.05

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin Carboxyl-terminal esterase L3 A, C 230 Homo sapiens EC#: 3.4.19.12 IUBMB
Gene Name(s): UCHL3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UBC protein B, D 75 Homo sapiens Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GVE
Query on GVE

B, D METHYL 4-AMINOBUTANOATE
C5 H11 N O2
KVQGGLZHHFGHPU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.166
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 46.11 α = 86.12
b = 49.29 β = 75.03
c = 67.62 γ = 76.78

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-03
  • Released Date: 2004-11-23
  • Deposition author(s): Misaghi, S., Galardy, P.J., Meester, W.J.N., Ovaa, H., Ploegh, H.L., Gaudet, R.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance