1VPT

AS11 VARIANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 1VPT

Classification: METHYLTRANSFERASE

Total Structure Weight: 40324.33

Macromolecule Entities
Molecule Chains Length Organism Details
VP39 A 348 Vaccinia virus EC#: 2.1.1.57 IUBMB
Mutation: R140A, K142A, R143A
Gene Name(s): PAPS VACWR095 J3R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAM
Query on SAM

A S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.215
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 85.30 α = 90.00
b = 67.80 β = 118.40
c = 80.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-03-20
  • Released Date: 1996-08-17
  • Deposition author(s): Hodel, A.E., Gershon, P.D., Shi, X., Quiocho, F.A.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • 2011-11-16
    Type: Atomic model