2GI7

Crystal structure of human platelet Glycoprotein VI (GPVI)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 2GI7

Classification: BLOOD CLOTTING CELL ADHESION

Total Structure Weight: 40811.44

Macromolecule Entities
Molecule Chains Length Organism Details
GPVI protein A, B 184 Homo sapiens Fragment: Collagen binding domain, residues 21-203
Gene Name(s): GP6 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.223
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 114.06 α = 90.00
b = 45.29 β = 90.00
c = 75.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-28
  • Released Date: 2007-04-03
  • Deposition author(s): Horii, K., Kahn, M.L., Herr, A.B.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance