2C19

5-(4-Carboxy-2-oxo-butylsulfanyl)-4-oxo-pentanoic acid acid bound to Porphobilinogen synthase from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 2C19

Classification: LYASE

Total Structure Weight: 74676.89

Macromolecule Entities
Molecule Chains Length Organism Details
DELTA-AMINOLEVULINIC ACID DEHYDRATASE A, B 337 Pseudomonas aeruginosa EC#: 4.2.1.24 IUBMB
Mutation: I199V
Gene Name(s): hemB PA5243
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
C1X
Query on C1X
A, B L-PEPTIDE LINKING C16 H26 N2 O6 S LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.144
  • Space Group: P 4 21 2

Unit Cell:

Length (Å) Angle (°)
a = 127.20 α = 90.00
b = 127.20 β = 90.00
c = 85.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-11
  • Released Date: 2006-06-20
  • Deposition author(s): Frere, F., Nentwich, M., Gacond, S., Heinz, D.W., Neier, R., Frankenberg-Dinkel, N.

Revision History

  • Version 1_0: 2006-06-20

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance