5T28

mPI3Kd IN COMPLEX WITH 5k


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 5T28

Classification: TRANSFERASE

Total Structure Weight: 108176.05

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform A 939 Mus musculus EC#: 2.7.1.153 IUBMB
Gene Name(s): Pik3cd
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
74Q
Query on 74Q

A 3-(benzotriazol-1-yl)-5-[1-methyl-5-(1-phenylcyclopropyl)- 1,2,4-triazol-3-yl]pyrazin-2-amine
C22 H19 N9
XOIZTLBSABIUDC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.228
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 63.55 α = 90.00
b = 142.80 β = 90.00
c = 220.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-23
  • Released Date: 2017-04-12
  • Deposition author(s): Petersen, J., Terstige, I., Perry, M., Svensson, T., Tyrchan, C., Lindmark, H., Oster, L.

Revision History

  • Version 1_0: 2017-04-12

    Type: Initial release