5J6H

Recognition of the MHC class Ib molecule H2-Q10 by the natural killer cell receptor Ly49C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 5J6H

Classification: IMMUNE SYSTEM

Total Structure Weight: 47803.72

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, Q10 alpha chain A 302 Mus musculus Gene Name(s): H2-Q10
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B 100 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
VAL-GLY-ILE-THR-ASN-VAL-ASP-LEU F 8 Mus musculus EC#: 2.4.99.18 IUBMB
Gene Name(s): Rpn2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCA
Query on NCA

A NICOTINAMIDE
C6 H6 N2 O
DFPAKSUCGFBDDF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.177
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 55.42 α = 90.00
b = 81.66 β = 90.00
c = 97.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-05
  • Released Date: 2016-07-13
  • Deposition author(s): Berry, R., Rossjohn, J.

Revision History

  • 2016-07-20
    Type: Database references
  • 2016-09-14
    Type: Database references
  • 2017-08-09
    Type: Data collection, Database references, Derived calculations
  • 2017-09-20
    Type: Author supporting evidence